An R package for Multi-Omics data integration and visualization
Parallel Mutual Information Estimation for Gene Network Reconstruction
An R package for the identification of significant signal paths within significantly altered biological pathways.
graphite (GRAPH Interaction from pathway Topological Environment) is a computational framework to store, parse and convert pathway topologies to gene-gene networks.
An R pipeline to perform topological pathway analysis integrating gene and miRNA expression profiles
R package for multi-omic topological pathway analysis looking for survival-associated gene modules
A scalable normalization for single-cell RNA-seq data
a new method for simulating data from perturbed biological PATHways
A Graphical Model Approach to Identify Primary Genes in Perturbed Biological Pathways
Gene Set Analysis Exploiting Pathway Topology