G. Sales

Latest

• A thorough annotation of the krill transcriptome offers new insights for the study of physiological processes
• BrewerIX enables allelic expression analysis of imprinted and X-linked genes from bulk and single-cell transcriptomes
• Hydrogen peroxide induced by nerve injury promotes axon regeneration via connective tissue growth factor
• NewWave: A scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data
• MyoData: An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle
• Expression profiles of PRKG1, SDF2L1 and PPP1R12A are predictive and prognostic factors for therapy response and survival in high-grade serous ovarian cancer
• Meta Graphite-a new layer of pathway annotation to get metabolite networks
• Sex identification from distinctive gene expression patterns in Antarctic krill (Euphausia superba)
• KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)
• LncRNAs as novel indicators of patients' prognosis in stage i epithelial ovarian cancer: A retrospective and multicentric study
• A data-driven network model of primary myelofibrosis: Transcriptional and post-transcriptional alterations in CD34+ cells
• A prognostic regulatory pathway in stage I epithelial ovarian cancer: New hints for the poor prognosis assessment
• Characterizing genomic alterations in cancer by complementary functional associations
• Disentangling the microRNA regulatory milieu in multiple myeloma: Integrative genomics analysis outlines mixed miRNATF circuits and pathway-derived networks modulated in t(4;14) patients
• An aberrant microRNA signature in childhood T-cell lymphoblastic lymphoma affecting CDKN1B expression, NOTCH1 and growth factor signaling pathways
• TimeClip: Pathway analysis for time course data without replicates
• Tissue-specific expression and regulatory networks of pig microRNAome
• Wiring miRNAs to pathways: A topological approach to integrate miRNA and mRNA expression profiles
• Along signal paths: An empirical gene set approach exploiting pathway topology
• Graphite Web: Web tool for gene set analysis exploiting pathway topology.
• MiRNA landscape in stage i epithelial ovarian cancer defines the histotype specificities
• Systems biology approach to the dissection of the complexity of regulatory networks in the S. scrofa cardiocirculatory system
• Graphite - a Bioconductor package to convert pathway topology to gene network
• MAGIA2: From miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)
• Impact of host genes and strand selection on miRNA and miRNA* expression
• Parmigene-a parallel R package for mutual information estimation and gene network reconstruction
• Statistical Test of Expression Pattern (STEPath): A new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies
• Impact of probe annotation on the integration of miRNA-mRNA expression profiles for miRNA target detection
• Magia, a web-based tool for miRNA and genes integrated analysis